NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000243

Scaffold Ga0209297_1000243


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37168
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (82.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002986Metagenome / Metatranscriptome515Y
F009516Metagenome316Y
F014495Metagenome / Metatranscriptome262Y
F015592Metagenome / Metatranscriptome253Y
F029429Metagenome / Metatranscriptome188Y
F063699Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100024311F009516AGGAMSRPMIYPMGTMEVGDVATMPATDSTLIKRTSRNCSQYGIRNGQSYKCRTDVVKGLTFITRLG
Ga0209297_100024312F014495GAGGMIKVAQIAPMGRKYRISSDSASVWPLRGLDGKTWAERRAEQEKESNK
Ga0209297_100024322F063699GAGVAKHHNIKAYEIANEAGITRVTLSNWKNKRSEPMLGAYLAAFHALERIIAAKAVD
Ga0209297_100024329F029429AGGMTPAKLKLARVAMGYSVTEMADALRLSPDNGATSIRKMESGKVRISGPIMVAVDAMLKGYDPFGDDYEDEGGQY
Ga0209297_10002434F002986GAGMNTIDATQAQLNTHEEVCAFRYESICARMKRLESIGMGACGTIIMLLIGILLSILLKGVT
Ga0209297_10002437F015592N/AMKFLMLLLGVLNKLLGAWGEYRWKQQGHQEAIKEVNDEINRQIELGEAAIIIPDPERTERLRDRFDRSRK

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