Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1000243 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37168 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (82.76%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002986 | Metagenome / Metatranscriptome | 515 | Y |
F009516 | Metagenome | 316 | Y |
F014495 | Metagenome / Metatranscriptome | 262 | Y |
F015592 | Metagenome / Metatranscriptome | 253 | Y |
F029429 | Metagenome / Metatranscriptome | 188 | Y |
F063699 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209297_100024311 | F009516 | AGGA | MSRPMIYPMGTMEVGDVATMPATDSTLIKRTSRNCSQYGIRNGQSYKCRTDVVKGLTFITRLG |
Ga0209297_100024312 | F014495 | GAGG | MIKVAQIAPMGRKYRISSDSASVWPLRGLDGKTWAERRAEQEKESNK |
Ga0209297_100024322 | F063699 | GAG | VAKHHNIKAYEIANEAGITRVTLSNWKNKRSEPMLGAYLAAFHALERIIAAKAVD |
Ga0209297_100024329 | F029429 | AGG | MTPAKLKLARVAMGYSVTEMADALRLSPDNGATSIRKMESGKVRISGPIMVAVDAMLKGYDPFGDDYEDEGGQY |
Ga0209297_10002434 | F002986 | GAG | MNTIDATQAQLNTHEEVCAFRYESICARMKRLESIGMGACGTIIMLLIGILLSILLKGVT |
Ga0209297_10002437 | F015592 | N/A | MKFLMLLLGVLNKLLGAWGEYRWKQQGHQEAIKEVNDEINRQIELGEAAIIIPDPERTERLRDRFDRSRK |
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