Scaffold Ga0209297_1000071

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000071
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74238
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F047558	Metagenome	149	N
F051792	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100007124	F000332	N/A	MRWLLLLLLLGLVGAVAKNGCYVREFYGIGYTFHNPTERHQEMVAWLGKNAPYCKSTDYVVIYNNLSEWAGTADSTKIRELVIHGYKEALEREKK
Ga0209297_100007125	F001538	GAG	MIETIRLFPTVQASGYPDMHDLAQKKLEKQHEINKALELAKQKQVQLQDIGFEIYCKKVTQERIRMEIFTNRKLDVYA
Ga0209297_100007126	F047558	GGA	MVTKKAPAKVAPVKRRTPKPKVEVVAAPAPKPEVKKDDSTIGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAQKLQKDLEAETVLVHKVTLVVNSRVTLLAYGPKGRDTTLDGYNSTLFGKDATRNAAVIAMMNGEVHCDKLVVSGKTSDWEEKQGVGFICRGSIPPEMGAFEGYISVGFTKEPQDLGAVKTRINLAATEMAK
Ga0209297_100007136	F051792	N/A	MNNTGYSRKFIQANKAADQKHIGVQLGRICIDRDIPVQDVAEYIGVSRQAAYMWFLGRSLPHPKMRETIAEVIKTLRAKSNQSTI