Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1000022 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 176829 |
Total Scaffold Genes | 215 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 150 (69.77%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F041242 | Metagenome / Metatranscriptome | 160 | Y |
F056435 | Metagenome / Metatranscriptome | 137 | Y |
F071987 | Metagenome | 121 | N |
F073105 | Metagenome / Metatranscriptome | 120 | Y |
F096668 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_1000022106 | F056435 | GGA | MKTLAFRILATFAASGLGVIGAGAIANIPLWKAVFMAGVAGVAQVVEGLSRAYLDDGKLSVGEINSVFNKVDRADSK |
Ga0209297_100002211 | F041242 | N/A | MTGNGGDQMTEPTKQWQDFLDPDAPLTEDAVWQAIADANDLDYSEIADGDLFEWL |
Ga0209297_100002239 | F073105 | N/A | MTTTINITWHQPDERSQGREDSAWYTHSADHHDIVASVSNGERTVYIYSDGEQRAHLAYDPTDWSKGHEVIRYCDQWGDIKNDNDIYEASESGRLDWINNSWFDLYAEEQGWSDCVQHTLTEAIASATELLADDEYWETV |
Ga0209297_100002267 | F071987 | AGGA | MTTTLLQRTKDAIADGKIIGDGHTIFNPDFYAPHFSEDELSKAKLIQTFKSDKSDHKSTIFGKDGKPMEKLKGVYNLTFLYWLCGALGINSHNDYNGRGSQADELARRIRKELA |
Ga0209297_100002272 | F096668 | AGGAG | MGLIAFHTPEDGFTLNGVEVEIIWDDTPEATEGVRIIVDENAVRVTDILSDPDHSEHDMWSAWDDDIFYYCESEQEWKELLVTGHHDGWRVLQ |
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