Scaffold Ga0209442_1067111

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1067111
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1508
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046906	Metagenome	150	Y
F066529	Metagenome	126	Y
F081034	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_10671111	F046906	N/A	MFIYDQETNSQTKEATDRGERQTNAMGDSYGKHHPVSLCFGYGNQLYAWPLGQRSGQRRDIQNDFTRFFYS
Ga0209442_10671112	F066529	GAGG	MIDKIRWFPIIDATGYPQKTDGTQRRIEKHQEEYRAIVKAAKAEEKLDDLLFELYCKKAEQQEIRLEIFTNRKLDVYL
Ga0209442_10671114	F081034	N/A	KYESILQRGNITFDNIEQMRRLANNLKSNPDKNIRRLASEMVDSIDDHVAALSPKDVVSGAGGIDVAVKTIMEARKDFRNLSRATTLQNVLDIAETKALNPTASESELIRQGFITLAANKSKMSLFSKDEQNAIKAVVKGSSLDPLLTLMAKFNPQRSQIMAGGAFAGSIAKPEIAIPIAAAGFGADKLQALLRRQSAEKAMSGLLTGTTPGPQPSYYTRGLLSTMMNPPQ