Scaffold Ga0209442_1010259

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1010259
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4579
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F002099	Metagenome / Metatranscriptome	593	Y
F046906	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_101025910	F002099	N/A	VFLHHRLGYDVRWVAALVLTLALQSTGKDLCSVREFYGIAYTIHNPSERHQQMSVWLTNHQHLCKSTDMVVIWNNLSEWAGSADSAELRHKVIIAYKNALEREKK
Ga0209442_10102598	F046906	GGA	MYDQEADNETSDRSQRQVNPMGDSHGKRNPVHLCFGYGNQLYAWPLGQRSGQRRNIQDDFTRFFYSYRRHDWLPEWYQANAK
Ga0209442_10102599	F001538	GAGG	VIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQTELQDLAFEIYTKKVVQERLRMEIFQNRKLDIYV