Scaffold Ga0209442_1008113

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1008113
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5194
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED273 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008553	Metagenome / Metatranscriptome	331	Y
F074374	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_10081131	F008553	GGAG	MALLDSILGLITKSPTDPDAPKPVVGSRSEREARIKDRA
Ga0209442_10081133	F074374	AGGA	MSTTTNLAPFDPSAGLRDKRVPIVDVVKGVVKRIGAKIAKSPAIDYKKHLKFAWVPADKVFINYERQRWPEPKHMQKLNVKWDIDCVTPLQCRYDPVEDRYYGSDGQQHMTVWLIQYGLLSEVPCFYVESTDPSIETKQLLSGNTDSEPMAKYFIHKQKIIMGDKTSIALEKAVTDANCETAYKKRQPGCITHISHLIEASETYGNGPLTLVLSKMLQFWPNEKIAEPTMLGFLKVRELLIEQNVFSDSIFNDIFYESSLYSDGAKELHLSINHAFQNTYPTNYKGMGVREKVASGVISLYEQAKGKKFCDKPFEIKMPTMHDTVVETEEDDE