Scaffold Ga0209442_1000320

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1000320
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28941
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034151	Metagenome / Metatranscriptome	175	Y
F044442	Metagenome / Metatranscriptome	154	Y
F058810	Metagenome / Metatranscriptome	134	Y
F085212	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_100032010	F058810	AGGAG	MLSAINQSIDTICSIKTKFVDTCVENEEIKSQLQTYIDAQQSFAKTMAKTTVDFFTTVGTSALAFDPRQAFKQ
Ga0209442_100032021	F044442	AGGA	MLKFANLSLAQKRFVVAVIESNKQYKKDPQITLKECASIYYTLRDQRAGVKNEKIGYPNWLFNKNKVERGVYQLPIPTDAELSAYKQELTAKLNPVVKAKAKVAKLAKAKTVVVKSKPAVKAKATEDALETNRLQRIIEESVSHDEDVEDFNQILRDNGIEV
Ga0209442_10003203	F085212	AGG	MKAFVETTKDWTTPVSNHIYYLSDDKRKMYAFYNIDTQTVKTFIKPIGFDPRYRTFKELKRK
Ga0209442_10003206	F034151	GGAG	MVSLNTCMMKAKITQNMISFITVRRGEWILKVSVFKNKQIMVLAQNLYEADKFYIRYFVDQNMAAEFIEQLVIEE