Basic Information | |
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Taxon OID | 3300027730 Open in IMG/M |
Scaffold ID | Ga0247833_1018776 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 5287 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006885 | Metagenome / Metatranscriptome | 362 | Y |
F018928 | Metagenome / Metatranscriptome | 232 | Y |
F028423 | Metagenome / Metatranscriptome | 191 | Y |
F045545 | Metagenome / Metatranscriptome | 152 | Y |
F070870 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247833_10187761 | F070870 | GGAG | MKKKTKIIILIILSFLTAVTLWVAANFKKISDLDIFDIEDD |
Ga0247833_10187762 | F045545 | GAGG | MIKQVGLFFICKIKSHSLVDAGACPFTGKNYAACTRCGAMITI |
Ga0247833_10187765 | F018928 | AGGAG | MIIRSLNTMEKIINKNKNLLWRGWDVIDLKESDTAKTSPVGIRVKDKWYLHRVYRPGRNGWDIPNKYKD |
Ga0247833_10187768 | F006885 | N/A | MEYLLIMGLTLLSYWSIIKISNKKRMIFLNKNKYRQSSIYQMVKDVVPKQRFDKPKVITQSQRHIQKNMLRVVIADGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELDKMLSILDDLKQGIGPNDSSGSGNKGI |
Ga0247833_10187769 | F028423 | AGTAGG | MENLEKNELLQLIRFYKQKLSDVELESLKLQLEVNKLNSIVLSLSKEPVKKTK |
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