NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247833_1018776

Scaffold Ga0247833_1018776


Overview

Basic Information
Taxon OID3300027730 Open in IMG/M
Scaffold IDGa0247833_1018776 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)5287
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006885Metagenome / Metatranscriptome362Y
F018928Metagenome / Metatranscriptome232Y
F028423Metagenome / Metatranscriptome191Y
F045545Metagenome / Metatranscriptome152Y
F070870Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0247833_10187761F070870GGAGMKKKTKIIILIILSFLTAVTLWVAANFKKISDLDIFDIEDD
Ga0247833_10187762F045545GAGGMIKQVGLFFICKIKSHSLVDAGACPFTGKNYAACTRCGAMITI
Ga0247833_10187765F018928AGGAGMIIRSLNTMEKIINKNKNLLWRGWDVIDLKESDTAKTSPVGIRVKDKWYLHRVYRPGRNGWDIPNKYKD
Ga0247833_10187768F006885N/AMEYLLIMGLTLLSYWSIIKISNKKRMIFLNKNKYRQSSIYQMVKDVVPKQRFDKPKVITQSQRHIQKNMLRVVIADGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELDKMLSILDDLKQGIGPNDSSGSGNKGI
Ga0247833_10187769F028423AGTAGGMENLEKNELLQLIRFYKQKLSDVELESLKLQLEVNKLNSIVLSLSKEPVKKTK

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