Scaffold Ga0247836_1011089

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1011089
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 8267
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012433	Metagenome / Metatranscriptome	280	N
F019290	Metagenome	230	Y
F023059	Metagenome	211	Y
F025225	Metagenome	202	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_10110891	F023059	AGGA	MWEAILASLAGLIGIIAWWTKNRAKTRRERDDDEIAYNRKLRDSEVDSW
Ga0247836_101108910	F090073	AGG	MSDILEEELSASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSIYFIWSFLYLHLLLHKNKREAIKLAWDKDEFRERVLDWVVDKTDEDRETATNIVSKIIEDASKARVSIVQSGLGQASGNE
Ga0247836_101108911	F019290	N/A	MEGTSYWGTTNIKVASAVAAFGATLRQTDPVTHIVKEDGSRQVTFWFNAGSGRHESKTQMECKWADMTSDEEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI
Ga0247836_101108912	F006138	GGAGG	MAATTIGTAGLVFGLTAETIGLVQSFSETRNIEKNEVRNQQGEITAVGFYNPTTAYSLSVAITGNNTLTVGGSFAALANAATVGTCRIDSLTINKTNSAFVTLDVSATGYPNVI
Ga0247836_101108913	F012433	AGGAGG	VSADQVADLRERLARIEERQTNIIAILERHTSELAQWTGKINSKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELVKVRVFPR
Ga0247836_10110898	F025225	N/A	MLQIELLNQAKFVHKLQQYQQASKKNMADVINSKLGDVAVTAIGTTYRTTAAQIASELQRVEGNIVTRKVFKPLGFTKTGKIKKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGLGGLGMGTKLGTIGALARRLVAGRKRSVNYIRNGWAAAADVFGKRGNLTRGDYSKEAIKRLGGGTKADGQKAQMEGIIFNRAGDLDTKYYPVRKRAVSGAAKVGMPGLIMAIDKVMKDMNVFLARKNKEESDKLGL