Scaffold Ga0247836_1002933

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1002933
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 23760
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006304	Metagenome / Metatranscriptome	376	Y
F015703	Metagenome / Metatranscriptome	252	Y
F036141	Metagenome / Metatranscriptome	170	Y
F048791	Metagenome / Metatranscriptome	147	Y
F057907	Metagenome / Metatranscriptome	135	Y
F070878	Metagenome / Metatranscriptome	122	Y
F074495	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_100293321	F048791	AGGAG	MAINFSNPNLTLGQMRTFVGELSDLDIGLDENDDISTDLVNGFIKEGFQKIVALSNRYPFYQSTYGFTTTVNQRAYGSFGRILPSIATVSITDIQQLIAVVNNTDGGNSLIYLDQARCESIWVGTSDQPETPAYFSIWANQLNLWPKPDQVYSMTIRGFRIPSLTWFQDENLPIDIDPQMQLPLVNYVMARIFQFQEDTEMANEYMRGFEKAVAIIQGQLTAPSSNRQLIMSGGLQLQAYDFAPFSSGMRVIPGSPYPGGIAL
Ga0247836_100293322	F074495	AGGAG	MNKETQSSGQGLAGTQPYGSVQGARHIGNARSDYHGKGVEVAPPSGVAFGGVHYKNGLCQAMNSKEEECKAPKAKGTDYCIGHLNGLKKMGENQDAALDPKE
Ga0247836_100293323	F070878	AGGAG	MVTKNKFIVERTNVLAADVTLGTTYAALDAGDFGWYGKAGETYEFSANVVYDADGATEGAAFSVTSATTPTAIQFVSVYPLSATTETKTQCVAVDTPDHGTSSVDGLNTAQVFGVVTPSADGFIGVSGVAENAAKITAKGGLSTLSWKRIFVGDNQ
Ga0247836_100293329	F006304	AGG	VAKKLTVAQKYSQLKKHTENAGMKVMEKDGKIVVSRRKKK
Ga0247836_10029333	F015703	N/A	VVEVEQNPGRKGWKPSGLMVTEAKWWVYVFSPQAFMSVEVDRLKRYLQINDIKLKDFVPHSNNPTRGYLLYPEDISKLLSSELYDSLVSDK
Ga0247836_100293334	F036141	AGGA	MEWIVPIVVAVIGGPLVVVVQKLRSENTSQHAESRDLLHKVAYKVDMVDEKLDGHLSWHLHRTRKKKNEDK
Ga0247836_100293335	F057907	AGGAG	MAKCNTCDVELSTDNDLKRNICFKCHVKGIKFGFRGVEYGQKSWNNSTIRETQRMYESMPNVEKVSTRKELI