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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027725 Open in IMG/M |
| Scaffold ID | Ga0209178_1000774 Open in IMG/M |
| Source Dataset Name | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9748 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.8834 | Long. (o) | -83.4195 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F001367 | Metagenome / Metatranscriptome | 713 | Y |
| F070523 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209178_10007741 | F001367 | AGGA | MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTILLPYANSAYRKVQRALGNAGGGGFIQDDALLVVPAVTQTDTSLQVSITDATAAPNQLPTDLLVPLKIWERRNGSTDDFLEMVDFTRHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQI |
| Ga0209178_10007742 | F070523 | AGGA | VKKDKITLFPEERVAIHAKLGSILKHGDPAEVLLVIILLLALRPVRQRKTPKKKGQPKRL |
| Ga0209178_10007743 | F000739 | N/A | MTRIELWLKGLLAAAISGGAGGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPSE |
| Ga0209178_10007745 | F000512 | N/A | MIQVLRETHDTPANVAHRLARAGGLNRLGEPNYRAIWGWNRLAWIGGKFEDRDEHGALLRERIELREEPKYPAVNRWHIERWLPPEAYGSPRQWYSQTIERANGISIPALGPYPSRGEYEHCFTLEGPRGEFLQLTPTVVEHIARAIEFSRGLSPAKSRAHLYDRAQRQEEHYESWAYGALDDAVPAFHKQPFVTVASCSIGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |