Scaffold Ga0209492_1054121

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1054121
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1416
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034230	Metagenome / Metatranscriptome	175	Y
F045836	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_10541212	F034230	GGAGG	MRKDLLVFMFAGVFLIGIAAAAQVAEAGPENDKLKVKVGPFFIQESEKKINLEGTASHVVRKGKRINVTVTVENYGKEKSEPVRLKYVETGKKAGEPRFYRIQAIEPGKKWERTFMARFDESGRKSVTATLLTLENQPLADEKGKPRPDTSHTGSVNLTVKEM
Ga0209492_10541214	F045836	AGGAG	MDNPNLFTALAYYTVSAFLDPIQWLICGICGWSVERLDQAMIAGAAMVSVLYIAMAAFYPDGKLFSFPTPHVGIAILGKAIGAVLMTGLIYWLKQRQLNRKKS