Scaffold Ga0209492

Basic Information
Taxon OID	3300027721 Open in IMG/M
Scaffold ID	Ga0209492_1001931 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209492_1001931 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6485
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6485

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008078	Metagenome / Metatranscriptome	339	Y
F058819	Metagenome / Metatranscriptome	134	N
F060411	Metagenome / Metatranscriptome	133	N
F064518	Metagenome	128	N
F073276	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_100193112	F058819	N/A	LHWFGKYGGAESYQFRGLIIDLQNANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKRKQVKCNVPHEDAVYISSLFYSPEVYIIENGKYVNVTISNAETLTDNNRTTDIELSFEVTYPNKPTAQL
Ga0209492_10019314	F008078	N/A	MTPKGKADELFNHYYNLIQSIGGELGQEILVSILAKQCALFAVREVLKEKWNIEDYDQYHYWEEVEHEIENI
Ga0209492_10019316	F060411	AGGAG	MVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPEHPKVELEAIQYLNERDAVYQKILPYAKKLKVITKDALQINVVCDLGKILQEQEVKDNVRRFLPPLIEQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVN
Ga0209492_10019318	F064518	N/A	LTIKKVAESGLFNLTGFTPLQSAEKAKLYTVFQYLASKAAEEKVINDISKSKK
Ga0209492_10019319	F073276	N/A	MSLVQLANIFEAATDAVQGLNGFSFGWPSDRVRSQIYTEEGENNTNIFPRVFFAVPTLTHLPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAFAERFILELGTTKTTNSIPEQVNLVLDSFTSIQRLITVQATFNISIKSEC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209492_1001931

Overview

Ecosystem & Geography

Associated Families

Sequences