NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209492_1000931

Scaffold Ga0209492_1000931


Overview

Basic Information
Taxon OID3300027721 Open in IMG/M
Scaffold IDGa0209492_1000931 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9038
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F046371Metagenome / Metatranscriptome151N
F063704Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209492_100093112F063704N/AMIITKYRMLFENGYIETLNEQEAIEWGNYETITEEVPDEETNG
Ga0209492_100093113F036240N/AMANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGKNFTNAIASGTLEKSLKYRLQIKGKNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQKAIYDWMTIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWHAFDYAMENIWDEYEAKIVAAYQKDFTATIENEFKDI
Ga0209492_100093114F028175N/AMAITIDDQPYQYTPIGQRLILVASSDNVSNAGFRYVFDFGSFQVNVQPNAADKGILDLAPIFREKLQHNPSFLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGIDKYAMSERTNETHKWSEAPARGLSSDWVYIPTRVSDWGVIYAPSATALLADSDFDIAVITSYDNTDTIIDTIMLSIADNPSIVNVVGAFYQNVAATGIDLTSAKYYTIQFGKEITFPIYSPSSRLYCFYLVADDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNTSTFGFNTYDRGTTDRYVTTTKGLQINSDWVSVGEFELLQTLCRSNDVFIINDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0209492_10009319F046371N/AMSDNKLNFLKSQISAFNPTWKKEQIEMEAIRIYNEANTIDDDDEGCLYCGS
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