Scaffold Ga0209617_10122738

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10122738
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_101227383	F088905	N/A	MSEKDIDTTPVVEVKEEAKPKAEAKAAAPAENADATVDYWANAWANRGV
Ga0209617_101227384	F001280	GAGG	MCIECGCESLGSETGIASVNITDVSRDGESGLTLGMTSTPEQTRQFINE
Ga0209617_101227385	F078716	N/A	MSENGTGTPTPPTSEPSGALTSREVPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPQKKGRPKKV