Scaffold Ga0209617_10087870

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10087870
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1263
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100878705	F006842	AGG	MKATPVICGDHLVPISECDCLSYLKEIETSAKRLVQLTKEREGMK
Ga0209617_100878706	F029021	GAGG	MNICQFCGWEIARVDWYHRYNSKLICDNCVMDTMSEREKEESK
Ga0209617_100878708	F011646	GAG	MELRNGALKRIIFYEVADAQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKQVSSQIEITPI