NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10000638

Scaffold Ga0209617_10000638


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10000638 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15729
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F002622Metagenome / Metatranscriptome542Y
F023341Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0209617_1000063816F002622AGGAGMTEDEANDARLAYYLEIGAVSFEGVDENGEIIYSISDSAKELAPELWQSHIEYVDKSLMDLYEKGFAHIEYNEDLEAIISLSPEGQKLAKEMGLIEMDLDQDIPND
Ga0209617_1000063818F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVIEYKRIWKLAGNRPMGNIRKHFSDYVQQIVEETIDKNEDGTL
Ga0209617_1000063820F000369GAGLSERFDRMNRVVEELLKGSTPTQISTITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADQSGQLAVKSGSLKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQDILVKILKETTSTCPKCKMEVAKRLSQITGIIESVPVEEADVV
Ga0209617_100006389F023341AGGAMPVYEYKCSYDDAHPTMSTHRSIMDEDPGYTCVECEAGMIRHFTPFGIQFKGDGFYKTDNPK
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