Scaffold Ga0209617_10000116

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10000116
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30454
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (41.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010817	Metagenome / Metatranscriptome	298	Y
F024058	Metagenome / Metatranscriptome	207	N
F028084	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000011611	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMDSSESIITNSDNTPTYFGQIYLYEGTLVKVSYKTSANTAVVTFLEGKDKDKVGTINLNNAKLVKENK
Ga0209617_1000011634	F010817	AGGA	LNKLASILVLNFLFVGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDSGITPYKDNFGNELFLISSEHLVYFGVLNSWLKEKVPADNILDKTIDKINN
Ga0209617_1000011636	F028084	N/A	VKKLILILPLFLLISCSEPNYESRELPTKYPETPTMGSADDVTKELYKK