Basic Information | |
---|---|
Taxon OID | 3300027720 Open in IMG/M |
Scaffold ID | Ga0209617_10000116 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 30454 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (41.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010817 | Metagenome / Metatranscriptome | 298 | Y |
F024058 | Metagenome / Metatranscriptome | 207 | N |
F028084 | Metagenome / Metatranscriptome | 192 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209617_1000011611 | F024058 | N/A | MTHRMINWNFQRKQMRENMRKNMDSSESIITNSDNTPTYFGQIYLYEGTLVKVSYKTSANTAVVTFLEGKDKDKVGTINLNNAKLVKENK |
Ga0209617_1000011634 | F010817 | AGGA | LNKLASILVLNFLFVGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDSGITPYKDNFGNELFLISSEHLVYFGVLNSWLKEKVPADNILDKTIDKINN |
Ga0209617_1000011636 | F028084 | N/A | VKKLILILPLFLLISCSEPNYESRELPTKYPETPTMGSADDVTKELYKK |
⦗Top⦘ |