Scaffold Ga0209815_1012022

Overview

Basic Information

• Taxon OID: 3300027714
• Scaffold ID: Ga0209815_1012022
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3955
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029902	Metagenome	187	Y
F099880	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_10120223	F099880	AGGA	MEIRKVYAPYSKSGEQVGQTPLEGYVEVNQAVYPAVNTGLINENGKWIGLKSSDEQFHNFAKDESIPNGQVILAPQSVTGKPPWVLDMTGFNKIQIAIKPTNGGNFAIEAIMGPDVFSYANLNPVNAAAGLRGNTSTNESESGLYTLFSDSSEAMTADVWNIFMINSDRLADQKLLQFKITNNSGGTSDIETAFMRVV
Ga0209815_10120224	F029902	GAG	MASYRVREGTVTAANSFTALDSLYGQSTSTSVQVPAGTSAIVGIIAAVSQNSATEDNCTFGIQLTGDGLSEQQTLTIGAATNVGTETSAGMTILPFALDVAIPVTASNQVSISGAMDADMGEAQFSVTLVFA