Scaffold Ga0209499_1004386

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1004386
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8323
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032657	Metagenome	179	Y
F034181	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_10043862	F032657	N/A	VSNEWKPLKTGYIVDEEIVNSFNGDKLNLVSPIVLRENLAYIFTLLGFKNYPDKEEMVVIEDFIRTSYPKYTVQEFRVAFKMAVQGKLDCSTDHYEKFSPKFIGQVMYAYTKKANEVRKNLKPILSSIEPPKLTDEEIVSFTQKEWLESSRNDFNKVFNADKVFDILLKSGKLSFEPEEMLKIVQTVRLDNQYKLNKMYGQDAKEFSKLIKDDKFVDTQCKKLALKRYFESLPS
Ga0209499_10043868	F034181	AGGAG	MNAIIYLNYQSKNIETLFHNIRNAGKNIDLVTIVDEIGIANAINVGLRQLKEFDFVTILGNDILEPDNWLEIRNQFMQDNTIGICSIPLVGLSGDTLDIIGNFTISSGALKKVGAMNKELDPYGAIDLDYCTRVRAAGFQTKYIPNTHATHIEQNGLDAYGYNKNEFVKKTWDLHNQNVADYSNGTKSYYIPL