Scaffold Ga0209499_1002704

Overview

Basic Information

• Taxon OID: 3300027712
• Scaffold ID: Ga0209499_1002704
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11198
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F027756	Metagenome / Metatranscriptome	193	N
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F039497	Metagenome / Metatranscriptome	163	N
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062447	Metagenome / Metatranscriptome	130	N
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209499_100270412	F027756	GAG	MKLKDLIDRKILYLNFPINRYAIQEGKVSEISPSEKCIKINNDWHLISNIRIIELFSEKERPSLGFN
Ga0209499_100270416	F034827	N/A	MKYNITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0209499_100270418	F104482	N/A	MKKKKKRMTSEEFEKTMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFHWLGWIFEFQWNR
Ga0209499_100270420	F032536	GGA	MSQKQTFEELMRSFRFHKNPILNWVFAECNYLYHTFLNGKWKVKNISQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFEKKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0209499_100270421	F062447	AGGAG	MKHKIFWEKNSRVKGIVPKEQIINKTSTDKFPCEAVTIRMYNLNSKNPTATAYFYGKEAQGTSWGGTNYTFAETKLMVTFDKDNEGYSFNGGLKSYSLQDLKEVLDSVRETLNKV
Ga0209499_100270422	F024040	GAGG	MNVYVSGHNWLAKVDLEDSIKKNDRYTEATTRAIESVLDDEEKQGVDLKIIDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLKDYEENCKEQGL
Ga0209499_100270424	F104483	GGAG	MNKKIIDKIDLIIEDINYLQEIIDFDTTDSSEYDLDSVVNLLAEIRGKVSTQEEEVEKIDLKQL
Ga0209499_100270428	F039497	N/A	MNEEDNFNCKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNAHTEEGDEDEI
Ga0209499_100270429	F082149	AGG	MKLGLHIDWCIGRWFGRDNNLEIRVILPTISLGFKKEYDDKWFGFKFNLRTDISFQSYEYGKIFTLIFLGLGVKVSKFNL
Ga0209499_10027044	F049419	N/A	MKLPKLDILDLLTTYIFFGLIYGTIVTLVWNYLFEPITFVHLSILQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIQADLDKEADEVEKQYEDLDKKD
Ga0209499_10027048	F044916	N/A	MGKKKVEKSRIEKGLEKEEKTFALMAKKIIDAIKDEKELRAFAKISLEILYKDNPNLFADHAKLKLKKK