NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10005538

Scaffold Ga0209599_10005538


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10005538 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4381
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F002598Metagenome / Metatranscriptome544Y
F021757Metagenome217Y
F045756Metagenome152Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000553811F048982AGGAMSIELRDVLSTCRQIRGNDRDSGTHYLLGYLWANTPDKEKERIAKLFANDLAELGNDNE
Ga0209599_1000553812F002598AGAAGGMATKLYTIQNLLIGKTYRSNSRNFQGEIIHAEPRPAIWYGENTEAYLVQVRVPHSLHDKYATIAVKVGE
Ga0209599_1000553814F021757AGGTGGMMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSGMFAEDNPNFKHEIFREACMK
Ga0209599_1000553816F000808AGGAMEYNYSLTVSYDGELVSTTRSADMLEIVTAWNKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGKVSVK
Ga0209599_100055389F045756AGGAMTKYNVLISYVVEAEDEMRAVFALNKSLMPLSENELEKFNAFHVEEAQ

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