Basic Information | |
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Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10005538 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4381 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000808 | Metagenome / Metatranscriptome | 882 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F021757 | Metagenome | 217 | Y |
F045756 | Metagenome | 152 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209599_1000553811 | F048982 | AGGA | MSIELRDVLSTCRQIRGNDRDSGTHYLLGYLWANTPDKEKERIAKLFANDLAELGNDNE |
Ga0209599_1000553812 | F002598 | AGAAGG | MATKLYTIQNLLIGKTYRSNSRNFQGEIIHAEPRPAIWYGENTEAYLVQVRVPHSLHDKYATIAVKVGE |
Ga0209599_1000553814 | F021757 | AGGTGG | MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSGMFAEDNPNFKHEIFREACMK |
Ga0209599_1000553816 | F000808 | AGGA | MEYNYSLTVSYDGELVSTTRSADMLEIVTAWNKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGKVSVK |
Ga0209599_100055389 | F045756 | AGGA | MTKYNVLISYVVEAEDEMRAVFALNKSLMPLSENELEKFNAFHVEEAQ |
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