NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209599_10004206

Scaffold Ga0209599_10004206


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10004206 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5296
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004696Metagenome427Y
F005299Metagenome / Metatranscriptome405Y
F025025Metagenome203Y
F032282Metagenome180Y
F103233Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100042062F032282N/AMNSIVNTIHSIDIEKYNSIEEERNKILNDKEFQQWCKDMKIGCRVEVKDYRSNELMNQYTNYPKWVSRQF
Ga0209599_100042063F004696N/AMDFAISKLKDDEVVLMKKIKSLKDGKPKWKCNEELVELRSAIKLLERYNEMTSQQMENEDEYLMELFEEHPPKAKA
Ga0209599_100042066F025025N/AMSKKIKEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGDIETENKMDKLETSLIKNVLSKKEKRELIATNVLEGALVSTKPTLDTAYSTYYNGGSLNVETTKGNGEDTDK
Ga0209599_100042067F103233N/AMIKGQTDEELYEALIDLGYDFGEYDTEDFDEDGFAATSVNLGYEWNEEQKLWYYNK
Ga0209599_100042069F005299N/AMNKNITPTHLQSPIDTPNEIWESKVGYDSANKRMVAKVYKHLYNVMELMSKPSWSAIIREMLIEDGRLNEVKVNGYYSTIRKNLKDIGVIQYNGRKGLSKGKNWDRFYSEEDWSWFITNTNSGGYGTIVK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.