Scaffold Ga0209599_10000247

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000247
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38085
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (12.99%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F059964	Metagenome / Metatranscriptome	133	Y
F090389	Metagenome	108	Y
F097335	Metagenome	104	Y
F105186	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000024712	F006935	N/A	MEKRYAQQIIEWAELAKQTLSVRKEIILDDSLTDEQLGIIIRQMYRAKAEAETESIERCKQYL
Ga0209599_1000024735	F090389	N/A	MNIKQFKRHHAIRVMNWCKVNVGLNYRRHTLPVLEWSNTGDDCGDYDFDDNIISVYKSKHKSVIDIIHTIIHEWCHYKQSTKKYYEYDKIFNYHDNPYEIQANELADSMKWKCKKDLFR
Ga0209599_1000024736	F059964	N/A	MYWVERGTLHIKKKLYMNNKVTNEFRDIAYNTARNERPVYVNFSATKMSNAVKPNSIVIFKDFLGRTHKVVCRNKPEIKKACEFFSMLKKESAQINRIIAQYPMSYGQVTKKFIPSVKAELKAMGLSSKQIQNILIMYWA
Ga0209599_1000024739	F097335	N/A	MNELTNEQQAMSQLYSVLCAVVQSDRTPKVTAEAVVATLQKLFEDENGPFTANEHMMGMTMAMAEAMNDIVKQRNKQIQRAAEGSSILANINWN
Ga0209599_1000024747	F105186	N/A	MYVKTNWRKYFDEDASPAVQEYLSQNGDKVYPWILQILKAAIEENLEEVAIIKFTDSKMFATIDKSEYKDLLNKMMEYFIEKEQYEQCGAIRDLIISIDNPPSPKPKRKYTKRKTKLQS