Scaffold Ga0209599_10000168

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000168
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45096
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (3.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F028802	Metagenome	190	Y
F030766	Metagenome / Metatranscriptome	184	Y
F093871	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000016810	F093871	N/A	MSVSSKYRLTRLNDGLVKEGTQLAWINYKLTGNSIYKRIAKGRGLVIYRSMGDYWQTTLVQSYKKLEDGTIMFTTENSNYKLEKINN
Ga0209599_1000016816	F008546	N/A	MKVKDKIPYWKLLIVFISAIALEANSIASFRYLMDKQWIGMVSMVFINPFLTLPMNHFTIEVKTFRGRSLIALAFALGFSVGVLLIRPAFI
Ga0209599_1000016825	F028802	N/A	MNKSMMLITSVWGSKKTFKLIPVTSESPYNEAIFDVDNKVLAVISKEKKESLHMLAKLNEFGDPQTMKIGRRANGKDYAEERKTLETFYEYYVENVPEVENFINMFAINADSFDYKQYFVEEKPATPSSIVTV
Ga0209599_1000016839	F030766	N/A	MAKKFYAQKDALGFPIPGTLMSVASTAKTPIDTIVIPATNVTPGAGQSVVAQPSGLRYFVRKDLKGNIVPNTLTISLKKPAGSVYEFKLLK