Basic Information | |
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Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10000168 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45096 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (3.51%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008546 | Metagenome / Metatranscriptome | 331 | Y |
F028802 | Metagenome | 190 | Y |
F030766 | Metagenome / Metatranscriptome | 184 | Y |
F093871 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209599_1000016810 | F093871 | N/A | MSVSSKYRLTRLNDGLVKEGTQLAWINYKLTGNSIYKRIAKGRGLVIYRSMGDYWQTTLVQSYKKLEDGTIMFTTENSNYKLEKINN |
Ga0209599_1000016816 | F008546 | N/A | MKVKDKIPYWKLLIVFISAIALEANSIASFRYLMDKQWIGMVSMVFINPFLTLPMNHFTIEVKTFRGRSLIALAFALGFSVGVLLIRPAFI |
Ga0209599_1000016825 | F028802 | N/A | MNKSMMLITSVWGSKKTFKLIPVTSESPYNEAIFDVDNKVLAVISKEKKESLHMLAKLNEFGDPQTMKIGRRANGKDYAEERKTLETFYEYYVENVPEVENFINMFAINADSFDYKQYFVEEKPATPSSIVTV |
Ga0209599_1000016839 | F030766 | N/A | MAKKFYAQKDALGFPIPGTLMSVASTAKTPIDTIVIPATNVTPGAGQSVVAQPSGLRYFVRKDLKGNIVPNTLTISLKKPAGSVYEFKLLK |
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