Scaffold Ga0209599_10000125

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000125
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54412
• Total Scaffold Genes: 131
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (71.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038679	Metagenome	165	Y
F040105	Metagenome / Metatranscriptome	162	N
F045097	Metagenome / Metatranscriptome	153	Y
F070111	Metagenome / Metatranscriptome	123	N
F076103	Metagenome / Metatranscriptome	118	Y
F085694	Metagenome	111	N
F093292	Metagenome / Metatranscriptome	106	Y
F101159	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_10000125106	F085694	AGGA	MTNNYVYTLQDLYKIFQQAEDKVAQLKEFQSLNLEYRINWDKLISLYS
Ga0209599_10000125110	F093292	AGGA	MPRKKIAAANTESPEVAQETVVETAPTYYEYITPDGISVLLDRYEWSRGLGLSDKNVKKAQAARHREVAKGFARTEEA
Ga0209599_1000012514	F040105	N/A	MAQRLQPKKFKQIDEALDWACEAETTDELRERVRAVSLGNSVLMRFVAWGVGYEQGPYNLPEGPTPYKDEGLPSNMADTTITQEFRRLLTLLPEGSAKKVPQFRREEIWMQTCQGVQIKEAKLLDHIKDQTLLEAYPRLAEVLESFLTGWKAPEVKKKKSPKKSLETL
Ga0209599_1000012518	F101159	AGG	MLTLADINAATGSKDASIYSDLYKEVYGCRPYNPKFESVEAFDADFEYLSLKLDKQIAYEQDRQAANFLKFTARVAATMQLVAGSTRERAIEIIAEAEGITAKEFDHYGLEILENELNLKYGSIAKWLSE
Ga0209599_1000012561	F038679	AGGA	MTEVVQKNMFLETMKWAGTACVVVAATCRAFDYHTADLLISIAGAGLWGYAGFAMKDKALIAVNAFVVGILIVGVIV
Ga0209599_1000012569	F070111	AGAAGG	MTKISVELDVEQFDKLVVEELIRTREAFLNDLGANNHVFVYGDQEADDIEIQKHIDSLDDLIKWFGTPEQVKKVFGDED
Ga0209599_1000012570	F045097	AGG	MKTDEIKGKMIEAIPYVAVFGIAALAVYGVTKLVEATKELDFPLDFGYDEYLDKIIDEQG
Ga0209599_1000012583	F076103	GGAGG	MRCRINSDDWEDLGKVYFVHALNNRANSTAVALVLEDDGGNIHKRVVASHQIEWVEE