Basic Information | |
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Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10000079 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 70090 |
Total Scaffold Genes | 115 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 88 (76.52%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011221 | Metagenome / Metatranscriptome | 293 | Y |
F034153 | Metagenome / Metatranscriptome | 175 | Y |
F040101 | Metagenome / Metatranscriptome | 162 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209599_1000007916 | F040101 | GAGG | MFKQFKWVPDGTYDSTEYLVRYVIVEGNAKTVISKMWVDEGGHATLGKELRQPWGAFPDFPLRPPKKVD |
Ga0209599_1000007939 | F011221 | AGGAG | MFYANMAIDSIQNAKINFLKQTVKEDTLQKPLVDFVEAQRVFTKQVAKSYSDVMSITAETFANAISGITKKGD |
Ga0209599_1000007956 | F034153 | GGAG | MAAQQGFQYEINAAKVLKPMGLVPKDFVPAGAGHDQPDLMLVHKNIKAGCELKITAASAGSLVLKYNTKNKANPWSFGDVKEAEDEKQFIMDLAKEVKLFDIIKKQWKTVPFKREKDALWEATAGKMTPKKRYERDRDTFKDIRGEISATKIEQYYNRKDTYYVNVGTHGFYTMGRRNPLMLEGVPMFGNSAKATYRARVQYKGNDNYQFTFEMQFSMKTKSPFNIAPVNGKSVEIIKKDINASCFV |
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