Scaffold Ga0209228_1138384

Overview

Basic Information

• Taxon OID: 3300027709
• Scaffold ID: Ga0209228_1138384
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 725
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013775	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209228_11383843	F013775	N/A	AKDYRTEIIPMLKSKGFTLSISTSKGSYWNDGRMNFQIKKIPSNFYVWTNEYNRYSKTEKSNKLLEVIRDRVRNLLLSTDLDVDLNFDYDKSVRYKPIPEGWDNGRNY