Scaffold Ga0209228_1028198

Overview

Basic Information

• Taxon OID: 3300027709
• Scaffold ID: Ga0209228_1028198
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005429	Metagenome / Metatranscriptome	401	Y
F007317	Metagenome	353	Y
F054341	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209228_10281981	F005429	N/A	MELRKETVEEFLQRGGTVTKVPQVLDTVGSWWGYNLHKFETLNDDTQKVVSWKSVQPDERFDTEDDDRKYWKKLDRRCDQLLKKMKVK
Ga0209228_10281982	F007317	N/A	VTRRKKTKMKKQSLVKTIKENGNGELYIEFSENELDQFGLKKGDSVEWMELEDGEVWKKVNKMKWSI
Ga0209228_10281984	F054341	AGGA	MMKFPKDHPYMIRLDKALKQYYVCKVIDANGAEHGEEYEEMKEEILNALFVPPEEIR