NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1029746

Scaffold Ga0209188_1029746


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1029746 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2628
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043282Metagenome / Metatranscriptome156Y
F057196Metagenome / Metatranscriptome136Y
F085212Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10297461F043282GAGMIEKELKMLKVNVGDTIRGYDFKPMVGREDCFVEGTVERITNEHGYDAYKITVTKDSWSDAECKGRVGKIVYVPVKVFHMDYPGRVINLSRI
Ga0209188_10297462F057196GAGGMFYKSKSELRAETEKQLALFLKKGGSIEVIKPRKAPRTKMNSKSTRVSSTGTGGFAVGFPRKSFI
Ga0209188_10297464F085212AGGMRAFQETTSTWTSNVTNHIYYLNDTKEFMVAFYNVNTGEVKKFSKRIKFDMRHRTFKELKHK

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