NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209188_1007272

Scaffold Ga0209188_1007272


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1007272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6691
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F007524Metagenome / Metatranscriptome349Y
F014848Metagenome / Metatranscriptome259Y
F022196Metagenome / Metatranscriptome215Y
F041568Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10072721F014848AGGAMQTYYDELATYEREGFTVIVDKTYEDMHPRDSFDDSCHDIDEICKDIDRGHFEWFMLRVRVLVEGLELSSQHLGACLYEDAREILTDGTAEDIIGEAMTDAKRQVYRLSRVFAALSEQVDKETA
Ga0209188_100727213F022196AGGAMTKAKSIPSSTGGVITFTATGLIHSAGKAYSGKIAAQEARQKPGKK
Ga0209188_100727216F000652AGGAMKVQVRTELVQELEVPDGWEREDVFDFLAQHQSFRDAFQGVSNENQTARILDVEVLTESVTTLGKEAYDE
Ga0209188_10072722F041568AGGAGMFSTENQVALKAELDQMYADQGAAFTAGYLNSMAQEMLNLMPKRQQKAFIKQVATFNGRQLVTVKNCLTGREVEIRREDRGTVNDPSQERFHSM
Ga0209188_10072725F007524AGGAGMARVTKSHAVAINKIMLPLIKTVAYFDTDEKDLSMFKMYVDDIAHNVAALHVFNDTLDAAQLHDSIMLQDTLPREHFYAVLKYIEDNNLIRASAFVCS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.