Scaffold Ga0209188_1004407

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1004407
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9318
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F033308	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100440713	F011665	AGG	MQNQINLGPISQFAQLLRSAELAQNKEVKMPIQQARMLSLALNEIQDKLLQDYETMFNQLRKSIDSGVVSIEIDGGGFKE
Ga0209188_100440718	F015338	AGG	MALKTGKPNQLNYFDLRKVDFACPHFKYTTIDKYNPNLLRNLNRWIKQNLNHRYYIGQGIELDNNNTIIYNTTIGFENEKELSFFTIACPHLDSR
Ga0209188_10044077	F002977	GGAG	MNVQIPAEGIMKTNDWGDSRVYRIACNCGDEDHNHNMWVEADDHDIVVNIYTTGKTNWWSKTRWYHIWTLLTKGYIDTESSVHLTRQQAFNYANTLLSAIEDLEQFKKDRDGHGKTIN
Ga0209188_10044078	F033308	AGGA	MDTAKQLTDELIYRMKTTDLNKFDIKREVGENWIPHGVVPFDIHASKGVATFTVWAESIQDAEDQVSTFLEQDTNE