Scaffold Ga0209188_1002661

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1002661
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12981
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F015330	Metagenome / Metatranscriptome	255	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100266113	F000857	AGGAG	MEKYETDEVSEDYYLKGNLEAGFDGVFRQNDKLFNEVKSGTWSQTFNTTNLDYKVGAIDGERYVQYTQHNVEAIREDCKKKREFYAIHGTDNPFFAGTFHAMELPKCFAHEIESRWFNNRPWDLIKKDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPSIPTR
Ga0209188_100266114	F005087	AGGA	MAQFIQSANTLVSRVASWVGAIPSSTSVNATSYTSATGVIGTASSLVGILNVGDFVGYNMSFPFTVVTAITSSTITVNDPDLIWSTATFPTALLKLPTQSVLEIQNSIQMAELKMRTVELPALRSDPYNATTPDYLTTDSQGLAPIPADMNWPILFFQQTPSSAVEPGSNAAGFGPWIIYDRVGDREIIRRKMIDQLYVKPFGVPRVIRASFSEVGPNYVFTPNPGSGVQILAYYQKTFPFLFSATSDVTNPLVQNNSVLATFPEGYFYGTLESYYDKNKNTSEAEKWRARFDEAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR
Ga0209188_10026612	F015330	AGGA	MDTVKETKKAIELATGKRTPKTKSVVNNVTEYGALFNRLNTERQEKGLPPLKTAMEVLIDAMQSDELDMKDKARIADKLAPFESSRAPIISIEHVQNIQKDEEEDAEQALESFLESLKKA
Ga0209188_10026615	F027490	GAG	MYGKIIDGGKQMSKGLTKGINDKLDGFKGENERRAVVANAVLDAYKVNTVSTQHTDNIHNSGKFTKASVPKKV
Ga0209188_10026616	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQIALDLIGKPKEEQYLVAKNALEGKKIPQDYQTDENPYIDRKELIPVDEMKKIPPRPDDLPPEDARVHFFGATNMPHPLDPQSDKKVMINFWKYENGMITYQISGPVEQVAIGSRINKFGQTQPEKYGWIDPRTEEILLRRQDGSFTEKGRGIYSYCIGEKGAGIWPLIDKDVITLTEKNIANPWA
Ga0209188_10026619	F004695	AGGA	MLDKQNVVVENLASPTGNRGIVEQVAHEAYVKMVDYLRLTQSKNTYNRFTDYHYLQIPVSNSTEPVRGIDYIAPIVTPGIDYATAVITKCLMPDGQVNFEFGRFSEMDAKACQQATDMVKYFINDKNDAYAIIRDWAQDSLLHKNGIVMVMPIRESITMYKEVEGTRDQLRAFEIQAADSGLTTKRQNMRRIDVDLQGAMAEMMNSQEEDSTQAEELNDALKNNYIYKAKYKLTGYSTNIKIKHVAQHYFVCNPTVPKIADQDFIGFYDPMTIHEAKVLYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTVWLRKDIDNDGEEEIIELCYSGSYILYAKEVDFIPLANMNPKPLVGNFFGYSLGERLVPMQEYATSVRRAELAFALQASTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPNKHVWEPQALQGNLGYVQSSMARFDGEKMAMIGMTSPGDTLNPEVMKDGNSGFKLQTAMGPNQLIQDEMVKNCAIGLKDVIYLTWKTLIQYADDYNIQQLAHVCSPDGGGFLDATAVENYQFIDRKMISLDLAMGFMSEENRLTRQQLITAAQQQFGQAMMLVPPQLPEMFTKLRLPYEDTLRSLGIRHVDAYLPTLEEFLKIGQFKSQQPPSAQDEQIKSKTQAQLAKAQETVANTEFIKKKTDDIDTDNMFEALAASRGKLSALQV