Scaffold Ga0209188_1002439

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1002439
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13718
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (86.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F036200	Metagenome	170	Y
F065525	Metagenome	127	N
F096877	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100243916	F065525	AGGAG	MYLKTYHKQMLRRLEHQPSPLKSFTHGDQNVGNVSVHFENYLNDLQNFGYVVSVDDVWHITGFGLAALHEKKNVATPTKMSNGTTTEFYDGKELKQTCARLGAYDFLKYPSKFGENLRYPRIYL
Ga0209188_100243917	F004231	AGGAG	MTVKPKDFQHEICVYLEGIGECLVCFDILTPGDELDPDHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKATDEMLDITTAWRKDWESV
Ga0209188_100243932	F096877	GGAGG	MKITIEYDDVIEARQAIHAHDVWTALLDINEAMRSHTKHDVSETQTIASIKEILSDVSQLLYS
Ga0209188_10024398	F036200	AGG	MNTQPLEWQPLWDAMEASPNDWIPTTEKMYWEMLEVLPPRKMIGRNFLVGEALCHVDGIPVYSCFSKVGDSYKTKNMTVRQFLEAFA