Scaffold Ga0209188_1001868

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1001868
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16218
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (93.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014848	Metagenome / Metatranscriptome	259	Y
F019477	Metagenome / Metatranscriptome	229	Y
F041568	Metagenome / Metatranscriptome	159	Y
F044486	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100186816	F019477	AGGAG	MGHWEFGEFRIGRLFHCNGNDYIKQSTRTARMLSNGRVFYFGKNEVIHAIAW
Ga0209188_100186817	F041568	AGGAG	MFTTDNQTALKNELNLMFTEQGAAFTAGYMNMMAQEMLNLLPKRKQKEFIRQVAAFNGRQLVTVKNCLSGQEVEIRREDLGTCNDPSMERFHSM
Ga0209188_100186818	F044486	GGA	MAFVIAGALCTSLRIDPLNILLLNAGALVYMIWALRIREMNLVIVNAVLLAIYAVGLMHGKA
Ga0209188_100186819	F014848	AGGAG	MQYYDELAQYEREGFSIIVDKTYEDMHPRDSFDDSCHNIDEICEKIDNGTYEWFMLRVRVLVEGLELSREHVGGCLYYDSREVLTDGTAEDLIDSAMTDAKKQVYRLGKVFAGLSEQVDREGACA