Scaffold Ga0209188_1001808

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1001808
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16578
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F018716	Metagenome / Metatranscriptome	233	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100180813	F026795	AGGA	MAKNYKDYAYFENRPDVVKLFEDLEAFHNWCRMELCEFNEGHLYNRESWQWRNFDKSRRPKKPFTGERKSYLGKNPRPYNNERISN
Ga0209188_10018083	F018716	AGGA	MTEHTVKVSWDNQSVPWWNECCAMVLEVFGLPGDRFVYTPHEDYMTFKFNNEKDADLCRILLSEKL
Ga0209188_10018086	F026556	GGAGG	MTSALIKLILGITLIVIVIALGPILGIWALNTLFPVLHIPLTWETWAAFGILFGGSIATRIKK
Ga0209188_10018088	F009462	AGGAG	MLVENLHESVKGTYTETVIKAHENFRLVLKKHEVLSPKGLFSVDMEQQSLKDGEVTDTATYNFFMTKEEMTTLASALTA