Scaffold Ga0209188_1000956

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000956
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25095
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (77.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006506	Metagenome / Metatranscriptome	371	Y
F008554	Metagenome	331	Y
F010472	Metagenome	303	Y
F013757	Metagenome / Metatranscriptome	268	Y
F017266	Metagenome	241	Y
F034176	Metagenome / Metatranscriptome	175	Y
F072324	Metagenome / Metatranscriptome	121	Y
F073563	Metagenome / Metatranscriptome	120	Y
F093145	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100095616	F093145	N/A	MKNLNNNEDLQMVEFLRKLDDLIMEQQDNFSAHEISGMLLSRLTLLMSNDLPVGKELLKFVWDKLDELEQSNPGQFL
Ga0209188_100095625	F073563	GGAG	MEPKYLYTIRWTQPYPTDRMRPYLRQLREDFEKIIEARLERKEFAEAEEIIRRIQDANKS
Ga0209188_100095631	F008554	GGAG	MTLEEEILNKAGKAMANDIDREVLWGMLQGMGWHRVMLPRLIDNYHAIDISYWLEENCKQAFERNGRDFIFEDSKDANWFKLRWGSV
Ga0209188_100095632	F034176	AGGTGG	MKNNYDYYNQVKHRDRAGDLEYFISKFECRVEDSREYNQYVRPSSYHQDFYDRDSFQMDTKITPMKAIHLTSDNLARLLAEQEHMQRLTDDAEQGKQVWREKIRDRAVRDANPAVEKAYQKYVILLELARK
Ga0209188_100095633	F017266	GGA	MQAMAGKYLLTSGRRMGKSYVNSLLQNWYTTMGITYTPKIKWQRLPGLKLQAYVDDVAPRGFERGLNESDLDPVQAWSIESNCGKRMSFNVWQFPSEKHVTMFLIRWAS
Ga0209188_10009564	F010472	GGAG	MSVLTEVMQSGHPWAAERAQYALQVHEAVGAGQLSPSEAKEILQDLISTDKLQEAAADQQAIAALVFGVTQLISLY
Ga0209188_10009565	F006506	AGGA	MKKLLVVLAFMGLTGCASIMEMIPSRWDVNQAKVITDIQVQANHFDCKADQASQLSALAINVEWFDTYARTKPTRDISKLTGTLTTTVKEYQDRLAKGPVSPMYCDIKLKIIKQQTEILAGSVQGRF
Ga0209188_100095650	F013757	AGGAG	MLTQCIAKAKLVYNKKLQSYKLVVAFNAHKQFKKDKYGNEKVVYAFPTQAKCAYVSGDLLANNLQNELASVLPIVYSTIRTNSVEFVD
Ga0209188_100095651	F072324	AGGA	MLQVTQYANGFSAQNNDVKNCEAIVFAEAVRTGKTMLQVLQYVLEEDDSDTNLLCACETLQETITNAYKKQIISDYLDEQLYKVQNA