Scaffold Ga0209188_1000830

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000830
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27431
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F050233	Metagenome / Metatranscriptome	145	Y
F053996	Metagenome	140	Y
F086842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100083024	F050233	N/A	MGILQLGQYAGAISAIALLVGMFIKWAILKPIKLYIDQATYPIHPAANGGRSLADVAQTVNRIETRMSDLDYRLNSIEELVTKPATRTKKQHPDRLAP
Ga0209188_100083030	F048854	AGG	MADEKENKDNMIALRLNNEQMLAVKQWAHQHNANISQVIRSAIELMTGAKQ
Ga0209188_100083031	F053996	AGGAG	MRTPSEQLVQTTWMAGNKLFANHDAVTPVDWAKVWEIVDNIDQPEFDEHQLVMVAVLEFLCGSEMVEVSLDEIANLPELERQAVVDALRLKWSKVELQENL
Ga0209188_100083033	F086842	AGGA	MNKADVGKVLAIASAIDARLGAADEAGFRAKVEGWSLALSESMDFEFARDAIGKHYKNSTDSLMPAHLNAMWNSHRSRQHEIDNVRAIGSSPKSQGMPDDVRAKLVELGLKRP