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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027708 Open in IMG/M |
| Scaffold ID | Ga0209188_1000816 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27951 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (60.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001259 | Metagenome / Metatranscriptome | 735 | Y |
| F004664 | Metagenome / Metatranscriptome | 428 | N |
| F005740 | Metagenome / Metatranscriptome | 391 | N |
| F007361 | Metagenome / Metatranscriptome | 352 | N |
| F012040 | Metagenome / Metatranscriptome | 284 | N |
| F012111 | Metagenome | 283 | N |
| F077447 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209188_100081612 | F077447 | AGGA | VQVEIISDDVEIRIGEMKWVGVAYTRDGKSKVYVRTKAEFKAKFIPVIEQAP |
| Ga0209188_10008162 | F001259 | AGGA | MKDSPAFVYVHKTNGSIRVESLDTARNIDGNPEWKHVSTVNAHVILENILRTKGKERNQIIKHLLT |
| Ga0209188_100081620 | F007361 | GGA | MSVLFSLEGDCIGLHEQGATDPNWQKSIENYRNRYKYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECTERFGYEVHLPSIQMLREYADKWAASNSVMTIGEGELFKVDTLRRIWIHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRFAKEVF |
| Ga0209188_100081622 | F005740 | GAG | MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGGENGACVGKQLVDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFISLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF |
| Ga0209188_100081624 | F012111 | AGG | MSERAPRRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYQTCLSITADNTLVTADQTNVTADGYSEECYSSSGLTGVFQCALPYIGDNGSTFILMLISGKVWLYDCLQNNVQNLSATPDLENPSNILDGWMVQAENFVVIQDGKSAPLIFNGSNLRRATINEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQTISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQTDLLWASSAVVFDNRLLMTSQPRYDAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLSDGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPLSNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE |
| Ga0209188_100081627 | F004664 | AGGAG | MSGYKVLNEHMVIPGGWSYRVPETGIEIAGGSWPQLHEFIRNHYTANAIKIPANIDTLITEYACRNGADCSYDEVNIPKPSGLKSLQLGDVIRFSMSLLHGLTVGGGKVGQAEANRRANICSTCPFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRSCTET |
| Ga0209188_100081634 | F012040 | AGGAG | MQLPEIDILEWTTSGQTAELAVILQNPLLRMALRIVAESMPIPMPSNGTKESDIVFAAGVTAGYAHCLENLRKLAVTDTTREPEATFEKQY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |