Scaffold Ga0209188_1000595

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000595
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33904
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (67.31%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F007848	Metagenome	343	Y
F010521	Metagenome	302	Y
F014955	Metagenome	258	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F021938	Metagenome / Metatranscriptome	216	Y
F027764	Metagenome	193	Y
F029048	Metagenome / Metatranscriptome	189	Y
F046243	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100059510	F017287	AGG	MDTYIRRVFEGEAPCDKCSQAEDCKENEWACRAFSYYVLHGIFQEYTVRQPTRELFERIFKDDDKALQNYLKSLKAKE
Ga0209188_100059511	F027764	N/A	MNIQIEIVKEHEDGSADALVHFDAEGLGILVEAGILSILRQYIKQEKKKNKLKNELMEDV
Ga0209188_100059528	F021938	AGGAG	MLCPKCGYSDGNHVEAKKLTDEEFFMKWWTPTIGEEAAKASWLDKVAMKTRVAPMIIPDIPGHISMADGTWVDSRSKHRENLKRNHCIELGNDVPMQQKAPEMSRQSQEARKRQIAELAYAKLK
Ga0209188_10005953	F007848	GGA	MKDFIGSCLLGALLGAMFAYGVPAKAQTYPVTSPQGYNMGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPQGYATSVVGNTGYTVPPSPSTPPSPRVLQ
Ga0209188_100059538	F046243	AGGA	MKHMTRSYPPENAMLRAHKESTLEKQQKKRQEHNPPLELDDSGILNKKANQRMKRKEALSKAMNKYHDPDIVG
Ga0209188_100059545	F010521	N/A	MKLTPAILKNLYSAVYCMKPFDRWNMPLPEEINFIVDKDPATMGTYLYDDGGKYEHIITISEARCGSIDTVLKVLFHECIHMSRHKTQRWTHYDKEFRNRAHRIAKELGFIDPLEL
Ga0209188_100059548	F017107	AGG	MTDYSENYLKIQQLLKSYHNATLKNQYEKATLIAHELAEETIKLEFSTYDQVRKQWLS
Ga0209188_10005955	F006255	GGA	MSELNQLMLEHEEFLESALDDMEFSNEYLTQEQVDCIRQACGKPRNNHVNPLLRDVINDFGAIFGGAK
Ga0209188_100059550	F014955	AGG	MEMYERYIVAATGLGYLVVGLAQYFKGSTPNAFIWLGYAAAQIGLWMNLK
Ga0209188_10005958	F029048	N/A	MEMLSHIRDVIGDKAIVSTEPFGVDEERQLIAFEVNDLAAVIKDVIRTCADCCVSPIDREAILDLLN