Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000594 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000594 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33908
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (66.07%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33908

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (66.07%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011648	Metagenome / Metatranscriptome	288	Y
F012854	Metagenome / Metatranscriptome	276	Y
F017467	Metagenome	240	Y
F022814	Metagenome	212	Y
F037693	Metagenome	167	Y
F040482	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100059423	F037693	AGGAG	MALVKKTVTCIHCKVDHEEYDATQYNDREKYLAYWNLPFEGEEADKAWQAKLDMTPKEAPMVLPDINGHISMADGTWVSSRSKHRENLKRNNCVELGNDVPLQQKVHEFSRKEQQERKQQIAEIAYSKLNYR
Ga0209188_10005944	F012854	GGA	MINLHNAIFKLNHLVVTIRGDIAYNANGNEVAYDLQAVTAQAQADAQAVIDTKASALAKLAALGLTQDEVKSLIG
Ga0209188_100059440	F022814	AGG	MRLSPEALKHLYSSLYCTYPFTKWPMPLPEEIEFVVTPDPEVMGTYLLDTGGDYAHTITISSGRCSHFYTVLTTLAHECVHMSFYKQKGDKWLQHGKPFRTRCKMVASELGFDPLEL
Ga0209188_100059445	F017467	AGAAG	LKNNSDDYLAWWYIGVAKKRGWPEVVRLLAQYPEKEERIKQLIKKKLGR
Ga0209188_100059449	F040482	N/A	MTWNLRLVNLSSPYEDYFEIREVYYDTMGKPIGHSSAAVGGEDRLEVDRYIELAKLALDKPILKFANNEDTSKDSQRE
Ga0209188_100059453	F011648	AGGAG	MSEQDQDFHSFQEHLERIFKDLEDGVFITADEIGDLRYACGLPSPVQKNPVLQAVFDDFSTIFRSKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000594

Overview

Ecosystem & Geography

Associated Families

Sequences