Scaffold Ga0209188_1000479

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000479
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38819
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (61.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F009749	Metagenome / Metatranscriptome	313	Y
F012867	Metagenome	276	Y
F051716	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100047929	F051716	AGG	LFTDFEYYYNNVPGKGLCRNNLIYTSLINKDKTVFCQHYSNDTEYHKGQNQIVDPSLMEEKWLREVNYITQMRNQYPELVPEITHVDLSNRKLFFKIQGVDFWQQTLDNTCTYDDILPNWRVQMLDIFKAHKALGIYKYSLHPSSYFIVNGQLKSINYFFCYNNSSAPISLRSVMSHISEDRQADLFPKMSALGIDVDALTPHEQIQQLAFESFKTNFPADFMDECKKLYV
Ga0209188_10004795	F012867	N/A	MMKDFYYEQTRLSVSEDWSDEVTMPMLADKLNVPRVSYRIYYAKDDLTRRIFIFRGNCTEFEMKTLLGLGFVFANVENGDANIPNQPVKEEQNAMD
Ga0209188_100047955	F009749	N/A	MSYSWILIIAMYSPAGDFMGKDTVGFESKKSCEAVRVQLPNLDHPMRVRHKGLCVTRDHWEGKKKMPGVDYD
Ga0209188_100047956	F001008	AGGAG	MTKEKHKKYQWIDGETADRITSMNLKDYRAYLKKEIKQWKKNPKSDANPTGYWLHPEDVGLNIQTIAALDLIISHFPETSDEIK