Scaffold Ga0209188_1000322

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000322
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49745
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005903	Metagenome / Metatranscriptome	386	Y
F006016	Metagenome	383	Y
F016248	Metagenome	248	Y
F043234	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10003222	F005903	N/A	MSTTYDPRNMEWDYYCRLMEEQFAPNQLGHVAEENWREWVDAMNGIGYFVMSGIPDHRYFQTWQEWAMQLVGIMSVDPQ
Ga0209188_100032226	F006016	AGGA	MTVVAHIQTEATIVSLANDIDALYVLDQQAKALAKQVEAMKDAIANKYGEGEFKGELHSVTVKMVAIKGTVDYKKLCVSYGIQDDVLDTFRKEGRADIRVTPQK
Ga0209188_100032230	F016248	GGAGG	MKEMSQLQRQLLGQEHVKLFTQQEFDDALAIAKAEIMTVAIETTKRAIMIEREECAKLADECVDIEKLGEAIRNRIPSQRFQ
Ga0209188_100032267	F043234	N/A	MRAIDNVMHVRQVRQYYKDLEHMVRYELGMPDLWVEIKEERDRLINEAREVELLHKRAKEQEELKRQEKFRRIKQKIHIYIASLIAVVYVYISIWLLTLLVEYDREWRWGY