NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000317

Scaffold Ga0209188_1000317


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000317 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50318
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F002097Metagenome593Y
F018874Metagenome / Metatranscriptome232Y
F034802Metagenome173Y
F067521Metagenome125Y
F082346Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100031727F002097GGTGGVGTTKLVCWILIGVAICLIVGVTSMAYVETLYMKAQLRQEIKELRKLKRELKESK
Ga0209188_100031728F000340AGGAGMNWADVLKAVIPIIVASLAWLLGQVNDFSTRLTRIEGAMPALITKEGIPTDSPISADRRTIMKEQLMNHINELQVKVRLLEEREKMGVKK
Ga0209188_100031743F018874N/AMNSEEEMHQLMLERMQMLEEALERAEAGVASGDDWSIIRSECGVPKRPIVTLETLSIRSESWD
Ga0209188_100031747F034802GAGGMDKQQAHELLDARKRGLAVLPSAIDQALFLTGDLRRNALEFGAGMDKSLQHTSSTGWQSKGKDLVANTGRFYGSQAWFDIRNGLKKTNEQIENQT
Ga0209188_100031755F067521GGAGMVEEDEEFTRIEMESRIKQEYIRNMKTPTREQLMAEVTVLTEMVRVLSDKVTELEGKHD
Ga0209188_100031765F082346AGGAMIRFSKQNLINALETKIAKMEDIWGFVTTNGTNQIKDKTDFDRVMAYGEYISLLDIYESVRDNTFLN
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