NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000283

Scaffold Ga0209188_1000283


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000283 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54568
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F011665Metagenome / Metatranscriptome288Y
F015338Metagenome / Metatranscriptome255Y
F020170Metagenome / Metatranscriptome225Y
F033308Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10002831F020170AGAAGMSKHVEPVDYQNEESHERLMQAFKEYFKANQDWQAKGTRRAGENMRYWLAQIRKIARERREHVQQYRVWLDREKLARKANQKAGDGGTE
Ga0209188_100028331F015338AGAAGMTLKAGKANPLNYFNLRRVDFACPHFKYTIIDRYNPTLIKSLDAWISKNLNNRYYIGQGIGLDSSNTIVYNTRIGFESEKELSFFTIACPIL
Ga0209188_100028336F011665N/AMQNQINTTPITQLIQLIKAAEISQSKEVRITIQQARLLNLALSEMLIKMNQDYESMYNALKASVNPEVVTVQLDGGGFGPPG
Ga0209188_100028343F033308GGAMETAKQLTDELIYRMKTTDLNKFEIKREVGDNWLPQGTVPFDISASKGIATFTVWAESIQDAEHQVSQFLERDDNE
Ga0209188_100028344F002977AGGAGMRVIQIPAEGIMKTNDWGDSRVYRIACNCGDEDHNHNVWVETDASDVVVTVYTTGKTNWWSKTRWYHIWTLITKGYVDTESTVHLTRQQAFNYAHVLLNAVEDSDKFREENGNSKTTN
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