Scaffold Ga0209188_1000133

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000133
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85295
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (60.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021920	Metagenome / Metatranscriptome	216	Y
F093147	Metagenome	106	Y
F104347	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100013311	F021920	AGGA	MAKTPKQQTATDLQRTLAGQWSKTEKRAEASRQIMASKKKTHEINKAFRNAQILAR
Ga0209188_100013331	F104347	AGGA	MNKFKLWYLNNRTEITWFLMGWLVLAGIQDLSHENYIGALISFGLAYINYKLK
Ga0209188_100013376	F093147	N/A	MENKTPTQQQQVQPEKRPNDTGSVTVDGFVKIFDPQTRKVFVEQKA