Basic Information | |
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Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1000076 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 116441 |
Total Scaffold Genes | 202 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 139 (68.81%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F036693 | Metagenome / Metatranscriptome | 169 | Y |
F042300 | Metagenome / Metatranscriptome | 158 | N |
F082114 | Metagenome / Metatranscriptome | 113 | N |
F089888 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209188_100007610 | F082114 | GGAG | MSTMTLDSNGNLGVGTITVSSNTTGMYNTAVGSSALAFGGFDMEDFLDTHSFNKITVEHKVAEFELAKLRETVPTYADEIKENLSKNLARDIIKKATFTKKHNVDSDTHHFLGRVWVFTEGELKDLINEARNA |
Ga0209188_100007612 | F042300 | N/A | MDLLNFYERPFRAKYIPSKVWKDLDNYRNDSKGLSNYFKKWRTKVEFLPQKSKAKLYDSYVAVGGEYGPDERQCCIQIYTTNFDRFPFTETTWNKFKYRILQTHMHELIHFMQFDRRGDEWSNYIVPYKKVNHEKKNIERRYLSEFDEIQAYAHCVLLDFKIYKPTISTEELINRAKYSKDSSTLNYILKAFNYDYRNNAAIPKLMQQIAKWDRKYQRTIRASRRPK |
Ga0209188_100007641 | F089888 | N/A | MKTIGLLLLSFSMYANAQAFKYNYEITCGPVMPIIQFLSETQQEKLTWTGLDISDGSVYSLWEDKEGNWTLLKKNSQIACIIGSGTKTKVI |
Ga0209188_100007653 | F036693 | GAG | MYNKRMKPRNPIAKDVRTPKYRMRVVESKVQYIRQPKHKKDIYES |
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