Scaffold Ga0209188_1000056

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000056
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130972
• Total Scaffold Genes: 217
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 150 (69.12%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021767	Metagenome / Metatranscriptome	217	N
F027415	Metagenome / Metatranscriptome	194	Y
F040943	Metagenome / Metatranscriptome	161	Y
F047646	Metagenome / Metatranscriptome	149	Y
F047648	Metagenome	149	Y
F051879	Metagenome / Metatranscriptome	143	Y
F064396	Metagenome / Metatranscriptome	128	Y
F068427	Metagenome / Metatranscriptome	124	Y
F070854	Metagenome / Metatranscriptome	122	N
F071976	Metagenome / Metatranscriptome	121	Y
F075702	Metagenome / Metatranscriptome	118	N
F078629	Metagenome / Metatranscriptome	116	Y
F082571	Metagenome / Metatranscriptome	113	Y
F089836	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000056131	F027415	GGA	MNDNVFVSCVTLAIVTLICSITFYQYSELKSVERNVESAIVKGIDPVAVRCAYATQSDMVCVAYGSSHQGFSTPKSSK
Ga0209188_1000056135	F047648	AGGAG	MAEFCVKCSEKEAEIEILRNQHYKEMQCMKEKIAKLQDENDALIMDVAFYGGNMINLSCNDK
Ga0209188_1000056136	F051879	AGG	MTLNEKYSDLQVQKMKLDKFFSMFLEKFERQMDPDRTDTPVWKLYKNKLKEYEKVDHELKATQYWINKERNV
Ga0209188_1000056187	F078629	N/A	MVDTVAVVTPDQALSVAVSEGVLTLSSTNLAAPAVVDSVSNIADVDIITNGKVNGSILVYKTSTNKWTSSTVLDGQNMEGGEF
Ga0209188_1000056216	F064396	N/A	MEKTMQNQWSGFDDFELACLCADYGYEDVLDIVEILPVKLANRAEIEALLTKHEFELAFG
Ga0209188_100005624	F021767	AGGA	MELEQIKDKLSAGEAKGALIEKVTFAVLPIMFACVVYLMNALSHVNTQLTILESKMQLVVTSDNKQAPNMGAELAREKLRQDFMQANTEALSRSGANKAVLDTLVWRVQELEKYKEKQSNNGGKK
Ga0209188_10000563	F047646	GGA	MSILNELREQAGLGGPAAALANELLVIHENYSNGELTSEEYGFLLQEIADIRAQQELASDEIACRWIVAAAQALISTM
Ga0209188_100005634	F071976	AGGA	MKYRVIVNGVSFYTSGAAIKRGVGDSVGVNTVVRQLFENMFNAIGIASTMTVYDHKMNRVSYDVQISKV
Ga0209188_100005638	F075702	AGGA	MIQINNLTEYQVEMLDHMWSLDSVEEYEEWYNLLDDEDQQLADSLQQMIILAEMDNLMDDCKDAKELLKKFAL
Ga0209188_100005650	F070854	GAG	VKKFAILWLLICANAYADVSFGTGESEDCNIAKALAVNDAIERYAEKEFEVKKQHICRERNAEGIECEYVKKTEIESAGTLKKVLSEKVKQKKDICVVEVKIELDPSRPLAGDIENASNFAYNGQKYPFDVITREPMYVYLFSVYDDKMHMMYPYDGIKSNLLHGKLTLPNGIWWQADIMSNAIESKDTLMAVFTKVKITFGSSMTRDEIYRQIASVPINARRVVYHNFVIKRRT
Ga0209188_100005686	F068427	AGAAGG	MNIKDYQMEPKKPLSFEEWKGNIAPQYQGEKLKAYDRLHNVDYEKEFNAMLKSEYAEYLSNLNGDWLLK
Ga0209188_100005687	F082571	GGAG	MILVATWITVGFFSAIGWYGANHLVIEPYLPPPRQIEKKKDD
Ga0209188_100005689	F089836	AGG	MKTVQQMETEAILSMMESMKTLEQQLADAKKRIDDLEKIISNQRAMIKELQ
Ga0209188_100005694	F040943	N/A	VHNKRGEFCSRSCGNSRPLTKEQKQKIGAAKSAWLTGGSEEAEVAVHNFVSGGNNKTAEPIAPIVSRDAGYRRFVEDGDLWEEV