Scaffold Ga0209188_1000030

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000030
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 159358
• Total Scaffold Genes: 254
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 205 (80.71%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Associated Families: 16

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F007110	Metagenome / Metatranscriptome	357	Y
F008812	Metagenome / Metatranscriptome	327	Y
F009680	Metagenome / Metatranscriptome	314	Y
F012108	Metagenome / Metatranscriptome	283	Y
F012658	Metagenome / Metatranscriptome	278	Y
F035281	Metagenome / Metatranscriptome	172	Y
F043902	Metagenome / Metatranscriptome	155	Y
F054798	Metagenome / Metatranscriptome	139	N
F057320	Metagenome / Metatranscriptome	136	Y
F061803	Metagenome / Metatranscriptome	131	Y
F070037	Metagenome / Metatranscriptome	123	Y
F074805	Metagenome / Metatranscriptome	119	Y
F085623	Metagenome / Metatranscriptome	111	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000030102	F007110	GGAG	MNCIYCKNCVGVERYEFLVETNRNILCKECSAEKKAVGFMDWGHKTAPSLVMVPSNAKETIRILDRANRRAR
Ga0209188_100003011	F009680	GGAG	MSDSNLAHIWQIIATTSIGIIVTLITFWAALVRHVVTKSEIENLIQTHSPYLQDRQFIMERLASNKESQNAFSMALQRNTEVMNELKVQIAMLAKTLEAIEYRIEKT
Ga0209188_1000030128	F043902	GGAG	MTIQQLRNSGYKVRVLHNRLYNGYYKWQVGSKPSGEQGYGPIDPDTKGGSTQIIIDGPSGDHYDGLAICSKKENYNKKLGVRIALGRCNIDQTFYVRAEATND
Ga0209188_1000030134	F085623	AGGA	MMTLLRTLILEYDLVEIHYNELLKNKPYLVRVFSYNNTDPSELRLDEEQVKNLYQTLKEHYLL
Ga0209188_1000030152	F035281	AGGAG	MIKFVLVFALMVLGSSTYAGECVNGHCTLRSRVVNVTQEIVAVPVAVTRRTVEATRNVGRRTVARVRSVVR
Ga0209188_1000030156	F061803	GGAG	MEIDINKQEAWKLLDALDAYKKDYTLTGPVNKIFDNITKKLKMVLKD
Ga0209188_1000030170	F008812	GAGG	MIQWVGILIAVLGLAYNGVKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYEATTQSYQDQGTTAVASSYGTQGTPSHRYGQSPQANTNPIR
Ga0209188_1000030171	F086678	AGGAGG	MSKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEHIYLDERGYKDYTNADGLTCVLHTTHILKDAGWTLE
Ga0209188_1000030172	F057320	AGGA	MSYVGLYDDEGSKNAFYIIKDKKINRKRVGFKEFENEQEAEFAHRVQKHLAQFDLAPMVYGDVGMIRRYDGELTAYGYLTEVARPMPECHDEDCDGECFQSECKNGVAIDEVVYDLREEYGLDYNDAHKGNFGYIRRKGKWVAVAIDLGVESFTDWDEDIYGKFDYDDVDSYGACGCTECELFRRGY
Ga0209188_1000030173	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0209188_1000030176	F006543	GGAG	MKKFSFAVDIVGDEIDSADVVSTLTKALNDELPGDVHANVKAAGIKAFSEQGYKVWRARVTGVTAEAAGDAHDGKVEKETETETVA
Ga0209188_1000030177	F012108	GGA	MIKIELSVRESLNMIANGCSLDMFDKIVCALEVALGVNQRRVVTITGGMNTDNRIPCIKAIRLHSGWGLKESKDWTDYLVGGWKYDTWHPAPANTKQSMTLKTPEAAEALLRDLVGLGCEGFLS
Ga0209188_1000030186	F054798	GAGG	MIYLNINEIERLAEIVAELVKLNMCVVAELKGTKWSIEVTK
Ga0209188_1000030193	F074805	N/A	MDVVIGFQFERVSMSDVILFGSILAAVAAAVVGFVFYSVYGGSKASLANAQEGQVFNFVYEQPLHGTHERFLAKVIGKQTLTADQIKRLNRKSRYRINDPEFVRTTNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF
Ga0209188_1000030208	F012658	N/A	MFATAYKPVTNNLDKIFSAMRAGKYHCVLDPKGNAHVGLINGIMREDGSGKNWIVTINSRLRSEQVFIHAS
Ga0209188_10000306	F070037	GAGG	MNFTESFQEFSSKLSTTDLALYAGVGLVLWVLFKDKLSPVQQLLTSVIDRVKGLTSGGGMKLPTVDVPKFDPVVLPKAVGDKDDVFFKLVVSWKQTRDLAEKSGCAEAVKVADQMFPFLSPNVCAKKEDKVV