Scaffold Ga0209188_1000004

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000004
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 340958
• Total Scaffold Genes: 443
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 298 (67.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021237	Metagenome / Metatranscriptome	219	Y
F035736	Metagenome / Metatranscriptome	171	Y
F098630	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000004233	F035736	AGGAG	MVEAKYNVGDDVSYGINGDRYYDGKITRITPRFIFTDTGKKYTKKQSYDGRTIYTETGCRYVYLIPGVHNHLDPHF
Ga0209188_1000004278	F021237	GAG	MKHWDYEWDIYPNYLLIDRELNLDCLGWKAGDLFRLENYNGQPMLKKVDPVEKFVRGYE
Ga0209188_1000004386	F098630	N/A	MTEEKKSKNPFIAAAQAAKNSAANPSVPGVKTAQVQKAKFGAQVQGNKPAKKSAGRGR