Basic Information | |
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Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1000004 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 340958 |
Total Scaffold Genes | 443 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 298 (67.27%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021237 | Metagenome / Metatranscriptome | 219 | Y |
F035736 | Metagenome / Metatranscriptome | 171 | Y |
F098630 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209188_1000004233 | F035736 | AGGAG | MVEAKYNVGDDVSYGINGDRYYDGKITRITPRFIFTDTGKKYTKKQSYDGRTIYTETGCRYVYLIPGVHNHLDPHF |
Ga0209188_1000004278 | F021237 | GAG | MKHWDYEWDIYPNYLLIDRELNLDCLGWKAGDLFRLENYNGQPMLKKVDPVEKFVRGYE |
Ga0209188_1000004386 | F098630 | N/A | MTEEKKSKNPFIAAAQAAKNSAANPSVPGVKTAQVQKAKFGAQVQGNKPAKKSAGRGR |
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